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Genome Research
Article
License: CC BY NC
Data sources: UnpayWall
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PubMed Central
Other literature type . 2012
Data sources: PubMed Central
Genome Research
Article . 2012 . Peer-reviewed
Data sources: Crossref
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Spreading of X chromosome inactivation via a hierarchy of defined Polycomb stations

Authors: Mark L. Borowsky; Ruslan I. Sadreyev; Ruslan I. Sadreyev; Yesu Jeon; Yesu Jeon; Jeannie T. Lee; Jeannie T. Lee; +4 Authors

Spreading of X chromosome inactivation via a hierarchy of defined Polycomb stations

Abstract

X chromosome inactivation (XCI) achieves dosage balance in mammals by repressing one of two X chromosomes in females. During XCI, the long noncoding Xist RNA and Polycomb proteins spread along the inactive X (Xi) to initiate chromosome-wide silencing. Although inactivation is known to commence at the X-inactivation center (Xic), how it propagates remains unknown. Here, we examine allele-specific binding of Polycomb repressive complex 2 (PRC2) and chromatin composition during XCI and generate a chromosome-wide profile of Xi and Xa (active X) at nucleosome-resolution. Initially, Polycomb proteins are localized to ∼150 strong sites along the X and concentrated predominantly within bivalent domains coinciding with CpG islands (“canonical sites”). As XCI proceeds, ∼4000 noncanonical sites are recruited, most of which are intergenic, nonbivalent, and lack CpG islands. Polycomb sites are depleted of LINE repeats but enriched for SINEs and simple repeats. Noncanonical sites cluster around the ∼150 strong sites, and their H3K27me3 levels reflect a graded concentration originating from strong sites. This suggests that PRC2 and H3K27 methylation spread along a gradient unique to XCI. We propose that XCI is governed by a hierarchy of defined Polycomb stations that spread H3K27 methylation in cis.

Keywords

Chromatin Immunoprecipitation, Binding Sites, X Chromosome, Research, Polycomb Repressive Complex 2, High-Throughput Nucleotide Sequencing, Polycomb-Group Proteins, Cell Line, Mice, X Chromosome Inactivation, Animals, Female, Protein Interaction Domains and Motifs, Alleles, Repetitive Sequences, Nucleic Acid

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
150
Top 1%
Top 10%
Top 1%
Green
hybrid