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Type 2 Diabetes Susceptibility Genes on Chromosome 1q21–24

pmid: 18269685
Type 2 Diabetes Susceptibility Genes on Chromosome 1q21–24
SummaryType 2 diabetes (T2D) has been linked to chromosome 1q21–24 in multiple samples, including a Utah family sample. Variants in 13 of the numerous candidate genes in the 1q region were tested for association with T2D in a Utah case‐control sample. The most promising, 19 variants in 6 candidates, were genotyped on the Utah family sample. Herein, we tested the 19 variants individually and in pairs for an effect on T2D risk in family members using a logistic regression model that accounted for gender, age, and BMI and attributed residual genetic effects to a polygenic component. Seven variants increased risk significantly through 5 pairs of interactions. The significant variant pairs were apolipoprotein A‐II (APOA2) rs6413453 interacting with calsequestrin 1 (CASQ1) rs617698, dual specificity phosphatase 12 (DUSP12) rs1503814, and retinoid X receptor γ (RXRG) rs10918169, a poly‐T insertion‐deletion polymorphism in liver pyruvate kinase (PKLR) interacting with APOA2 rs12143180, and DUSP12 rs1027702 interacting with RXRG rs10918169. Genotypes of these 5 variant pairs accounted for 25.8% of the genetic variance in T2D in these pedigrees.
- University of Utah United States
- University of Arkansas for Medical Sciences United States
- Central Arkansas Veterans Healthcare System United States
Male, Analysis of Variance, Polymorphism, Genetic, Models, Genetic, Calcium-Binding Proteins, Age Factors, Linkage Disequilibrium, Pedigree, Mitochondrial Proteins, Logistic Models, Sex Factors, Diabetes Mellitus, Type 2, Chromosomes, Human, Pair 1, Calsequestrin, Dual-Specificity Phosphatases, Humans, Retinoid X Receptor gamma, Female, Genetic Predisposition to Disease, Apolipoprotein A-II
Male, Analysis of Variance, Polymorphism, Genetic, Models, Genetic, Calcium-Binding Proteins, Age Factors, Linkage Disequilibrium, Pedigree, Mitochondrial Proteins, Logistic Models, Sex Factors, Diabetes Mellitus, Type 2, Chromosomes, Human, Pair 1, Calsequestrin, Dual-Specificity Phosphatases, Humans, Retinoid X Receptor gamma, Female, Genetic Predisposition to Disease, Apolipoprotein A-II
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