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High Confidence Fission Yeast SUMO Conjugates Identified by Tandem Denaturing Affinity Purification

Authors: Nie, Minghua; Vashisht, Ajay A; Wohlschlegel, James A; Boddy, Michael N;

High Confidence Fission Yeast SUMO Conjugates Identified by Tandem Denaturing Affinity Purification

Abstract

AbstractCovalent attachment of the small ubiquitin-like modifier (SUMO) to key targets in the proteome critically regulates the evolutionarily conserved processes of cell cycle control, transcription, DNA replication and maintenance of genome stability. The proteome-wide identification of SUMO conjugates in budding yeast has been invaluable in helping to define roles of SUMO in these processes. Like budding yeast, fission yeast is an important and popular model organism; however, the fission yeast Schizosaccharomyces pombe community currently lacks proteome-wide knowledge of SUMO pathway targets. To begin to address this deficiency, we adapted and used a highly stringent Tandem Denaturing Affinity Purification (TDAP) method, coupled with mass spectrometry, to identify fission yeast SUMO conjugates. Comparison of our data with that compiled in budding yeast reveals conservation of SUMO target enrichment in nuclear and chromatin-associated processes. Moreover, the SUMO “cloud” phenomenon, whereby multiple components of a single protein complex are SUMOylated, is also conserved. Overall, SUMO TDAP provides both a key resource of high confidence SUMO-modified target proteins in fission yeast and a robust method for future analyses of SUMO function.

Keywords

Affinity (mesh), 570, 1.1 Normal biological development and functioning, Sumoylation (mesh), 610, Small Ubiquitin-Related Modifier Proteins (mesh), Mass Spectrometry (mesh), Article, Chromatography, Affinity, Mass Spectrometry, Schizosaccharomyces, Genetics, Protein Binding (mesh), Reproducibility of Results (mesh), 1.1 Normal biological development and functioning (hrcs-rac), Chromatography, 31 Biological Sciences (for-2020), Genetics (rcdc), Schizosaccharomyces (mesh), Generic health relevance (hrcs-hc), Computational Biology, Reproducibility of Results, Sumoylation, Biological Sciences, 3101 Biochemistry and Cell Biology (for-2020), Multiprotein Complexes (mesh), Affinity, Multiprotein Complexes, Computational Biology (mesh), Small Ubiquitin-Related Modifier Proteins, Biochemistry and Cell Biology, Generic health relevance, Protein Binding

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
14
Top 10%
Average
Top 10%
Green
gold