<script type="text/javascript">
<!--
document.write('<div id="oa_widget"></div>');
document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=undefined&type=result"></script>');
-->
</script>
Label-free plasma proteomics identifies haptoglobin-related protein as candidate marker of idiopathic pulmonary fibrosis and dysregulation of complement and oxidative pathways

Label-free plasma proteomics identifies haptoglobin-related protein as candidate marker of idiopathic pulmonary fibrosis and dysregulation of complement and oxidative pathways
AbstractIdiopathic pulmonary fibrosis (IPF) is a lung parenchymal disease of unknown cause usually occurring in older adults. It is a chronic and progressive condition with poor prognosis and diagnosis is largely clinical. Currently, there exist few biomarkers that can predict patient outcome or response to therapies. Together with lack of markers, the need for novel markers for the detection and monitoring of IPF, is paramount. We have performed label-free plasma proteomics of thirty six individuals, 17 of which had confirmed IPF. Proteomics data was analyzed by volcano plot, hierarchical clustering, Partial-least square discriminant analysis (PLS-DA) and Ingenuity pathway analysis. Univariate and multivariate statistical analysis overlap identified haptoglobin-related protein as a possible marker of IPF when compared to control samples (Area under the curve 0.851, ROC-analysis). LXR/RXR activation and complement activation pathways were enriched in t-test significant proteins and oxidative regulators, complement proteins and protease inhibitors were enriched in PLS-DA significant proteins. Our pilot study points towards aberrations in complement activation and oxidative damage in IPF patients and provides haptoglobin-related protein as a new candidate biomarker of IPF.
- University of Helsinki Finland
- University of Helsinki Finland
- University of Helsinki Finland
- Mayo Clinic United States
- Mayo Clinic United States
Male, Proteomics, Proteome, ABSOLUTE QUANTIFICATION, DIAGNOSIS, BRONCHOALVEOLAR LAVAGE, Article, INFLAMMATION, Humans, Aged, ROLES, Haptoglobins, CHOLESTEROL, Computational Biology, Blood Proteins, Complement System Proteins, Idiopathic Pulmonary Fibrosis, MICE, Biomedicine, Oxidative Stress, ROC Curve, DISCOVERY, Case-Control Studies, IMMUNE-COMPLEXES, Female, Biomarkers, Signal Transduction
Male, Proteomics, Proteome, ABSOLUTE QUANTIFICATION, DIAGNOSIS, BRONCHOALVEOLAR LAVAGE, Article, INFLAMMATION, Humans, Aged, ROLES, Haptoglobins, CHOLESTEROL, Computational Biology, Blood Proteins, Complement System Proteins, Idiopathic Pulmonary Fibrosis, MICE, Biomedicine, Oxidative Stress, ROC Curve, DISCOVERY, Case-Control Studies, IMMUNE-COMPLEXES, Female, Biomarkers, Signal Transduction
8 Research products, page 1 of 1
- 2017IsRelatedTo
- 2017IsRelatedTo
- 2017IsRelatedTo
- 2017IsRelatedTo
- 2017IsRelatedTo
- 2017IsRelatedTo
- 2017IsRelatedTo
- 2017IsRelatedTo
citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).16 popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.Top 10% influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).Average impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.Top 10%