Binding of G-quadruplexes to the N-terminal Recognition Domain of the RNA Helicase Associated with AU-rich Element (RHAU)
Binding of G-quadruplexes to the N-terminal Recognition Domain of the RNA Helicase Associated with AU-rich Element (RHAU)
Polynucleotides containing consecutive tracts of guanines can adopt an intramolecular G-quadruplex structure where multiple planar tetrads of hydrogen-bound guanines stack on top of each other. Remodeling of G-quadruplexes impacts numerous aspects of nucleotide biology including transcriptional and translational control. RNA helicase associated with AU-rich element (RHAU), a member of the ATP-dependent DEX(H/D) family of RNA helicases, has been established as a major cellular quadruplex resolvase. RHAU contains a core helicase domain responsible for ATP binding/hydrolysis/helicase activity and is flanked on either side by N- and C-terminal extensions. The N-terminal extension is required for quadruplex recognition, and we have previously demonstrated complex formation between this domain and a quadruplex from human telomerase RNA. Here we used an integrated approach that includes small angle x-ray scattering, nuclear magnetic resonance spectroscopy, circular dichroism, and dynamic light scattering methods to demonstrate the recognition of G-quadruplexes by the N-terminal domain of RHAU. Based on our results, we conclude that (i) quadruplex from the human telomerase RNA and its DNA analog both adopt a disc shape in solution, (ii) RHAU53-105 adopts a defined and extended conformation in solution, and (iii) the N-terminal domain mediates an interaction with a guanine tetrad face of quadruplexes. Together, these data form the foundation for understanding the recognition of quadruplexes by the N-terminal domain of RHAU.
- University of Birmingham United Kingdom
- University of Manitoba Canada
- University of Nottingham United Kingdom
AU Rich Elements, Models, Molecular, Binding Sites, Base Sequence, Protein Conformation, Circular Dichroism, Molecular Sequence Data, Peptide Fragments, Recombinant Proteins, Protein Structure, Tertiary, Substrate Specificity, DEAD-box RNA Helicases, G-Quadruplexes, Humans, Nucleic Acid Conformation, RNA, Amino Acid Sequence, Nuclear Magnetic Resonance, Biomolecular, Telomerase
AU Rich Elements, Models, Molecular, Binding Sites, Base Sequence, Protein Conformation, Circular Dichroism, Molecular Sequence Data, Peptide Fragments, Recombinant Proteins, Protein Structure, Tertiary, Substrate Specificity, DEAD-box RNA Helicases, G-Quadruplexes, Humans, Nucleic Acid Conformation, RNA, Amino Acid Sequence, Nuclear Magnetic Resonance, Biomolecular, Telomerase
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