A new species, Rhaphidosoma paganicumsp. nov. (Heteroptera: Reduviidae: Harpactorinae: Rhaphidosomatini), is described from the Dry Zone of Myanmar. It is the fifth species of Rhaphidosoma Amyot et Serville, 1843, known from the Oriental Region, and the first record of the genus for Myanmar and Indochina. The structure of the external and internal terminalia of the male and female is described and illustrated in detail. The completely inflated endosoma is described for the first time in reduviids. The complex structure of the ductus seminis is shown; it terminates with a voluminous seminal chamber which opens with a wide secondary gonopore and may be a place where spermatophores are formed. The new species is compared with all congeners from the Oriental Region and Western Asia. It is characterised by the absence of distinct tubercles on the abdominal tergites of the male, the presence only two long tubercles and small rounded ones on the abdominal tergites VII and VI, respectively, in the female, the presence of short fore wing vestiges which are completely hidden under longer fore wing vestiges, and other characters. In addition to the morphological description, an account is given of the male karyotype and the structure of testes of Rh. paganicumsp. nov. and another species of Harpactorinae, Polididus armatissimus Stål, 1859 (tribe Harpactorini). It was found that Rh. paganicumsp. nov. has a karyotype comprising 12 pairs of autosomes and a multiple sex chromosome system (2n♂=24A+X1X2X3Y), whereas P. armatissimus has a karyotype comprising five pairs of autosomes and a simple sex chromosome system (2n♂=10A+XY). The males of these species were found to have seven and nine follicles per testis, respectively. FISH mapping of 18S ribosomal DNA (major rDNA) revealed hybridisation signals on two of the four sex chromosomes (Y and one of the Xs) in Rh. paganicumsp. nov. and on the largest pair of autosomes in P. armatissimus. The presence of the canonical “insect” (TTAGG)n telomeric repeat was detected in the chromosomes of both species. This is the first application of FISH in the tribe Raphidosomatini and in the genus Polididus Stål, 1858.