B cell genomics behind cross-neutralization of SARS-CoV-2 variants and SARS-CoV
B cell genomics behind cross-neutralization of SARS-CoV-2 variants and SARS-CoV
Monoclonal antibodies (mAbs) are a focus in vaccine and therapeutic design to counteract severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and its variants. Here, we combined B cell sorting with single-cell VDJ and RNA sequencing (RNA-seq) and mAb structures to characterize B cell responses against SARS-CoV-2. We show that the SARS-CoV-2-specific B cell repertoire consists of transcriptionally distinct B cell populations with cells producing potently neutralizing antibodies (nAbs) localized in two clusters that resemble memory and activated B cells. Cryo-electron microscopy structures of selected nAbs from these two clusters complexed with SARS-CoV-2 spike trimers show recognition of various receptor-binding domain (RBD) epitopes. One of these mAbs, BG10-19, locks the spike trimer in a closed conformation to potently neutralize SARS-CoV-2, the recently arising mutants B.1.1.7 and B.1.351, and SARS-CoV and cross-reacts with heterologous RBDs. Together, our results characterize transcriptional differences among SARS-CoV-2-specific B cells and uncover cross-neutralizing Ab targets that will inform immunogen and therapeutic design against coronaviruses.
- California Institute of Technology United States
- Harvard University United States
- Massachusetts Institute of Technology United States
- Beth Israel Deaconess Medical Center United States
- Howard Hughes Medical Institute United States
570, Immunoglobulin Variable Region, 610, cryo-electron microscopy, Antigen-Antibody Complex, Antibodies, Viral, Crystallography, X-Ray, Article, Antigen-Antibody Reactions, disordered CDRH3, Protein Domains, memory B cells, Humans, Protein Structure, Quaternary, B-Lymphocytes, SARS-CoV cross-neutralization, SARS-CoV-2, Sequence Analysis, RNA, Gene Expression Profiling, Cryoelectron Microscopy, Antibodies, Monoclonal, COVID-19, Antibodies, Neutralizing, Immunoglobulin A, single B cell genomics, Spike Glycoprotein, Coronavirus, monoclonal antibodies, Protein Multimerization
570, Immunoglobulin Variable Region, 610, cryo-electron microscopy, Antigen-Antibody Complex, Antibodies, Viral, Crystallography, X-Ray, Article, Antigen-Antibody Reactions, disordered CDRH3, Protein Domains, memory B cells, Humans, Protein Structure, Quaternary, B-Lymphocytes, SARS-CoV cross-neutralization, SARS-CoV-2, Sequence Analysis, RNA, Gene Expression Profiling, Cryoelectron Microscopy, Antibodies, Monoclonal, COVID-19, Antibodies, Neutralizing, Immunoglobulin A, single B cell genomics, Spike Glycoprotein, Coronavirus, monoclonal antibodies, Protein Multimerization
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