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Genomics
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Genomics
Article . 2006
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Genomics
Article . 2006
License: Elsevier Non-Commercial
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Bioinformatic characterization of the SynCAM family of immunoglobulin-like domain-containing adhesion molecules

Authors: Thomas Biederer;

Bioinformatic characterization of the SynCAM family of immunoglobulin-like domain-containing adhesion molecules

Abstract

SynCAM 1 (synaptic cell adhesion molecule 1, alternatively named Tslc1 and nectin-like protein 3) belongs to the immunoglobulin superfamily and is an adhesion molecule that operates in a variety of important contexts. Exemplary are its roles in adhesion at synapses in the central nervous system and as tumor suppressor. Here, I describe a family of genes homologous to SynCAM 1 comprising four genes found solely in vertebrates. All SynCAM genes encode proteins with three immunoglobulin-like domains of the V-set, C1-set, and I-set subclasses. Comparison of genomic with cDNA sequences provides their exon-intron structure. Alternative splicing generates isoforms of SynCAM proteins, and diverse SynCAM 1 and 2 isoforms are created in an extracellular region rich in predicted O-glycosylation sites. Protein interaction motifs in the cytosolic sequence are highly conserved among all four SynCAM proteins, indicating their critical functional role. These findings aim to facilitate the understanding of SynCAM genes and provide the framework to examine the physiological functions of this family of vertebrate-specific adhesion molecules.

Related Organizations
Keywords

Central Nervous System, SynCAM, Cell Adhesion Molecules, Neuronal, Nectin-like molecule, Amino Acid Motifs, Genetics, Animals, Humans, Synapse formation, Genes, Tumor Suppressor, Surface recognition, Cell adhesion molecules, Sequence Homology, Amino Acid, Genome, Human, Tslc, SgIGSF, IGSF4, Protein Structure, Tertiary, Immunoglobulin superfamily, Alternative Splicing, Central nervous system, Synapses, Vertebrates, Synaptic cell adhesion molecule, Genomic structure, Exon–intron junctions, Protein Modification, Translational

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    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    108
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
108
Top 10%
Top 10%
Top 10%
gold