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Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling

Authors: Anton Sabantsev; Robert F. Levendosky; Xiaowei Zhuang; Gregory D. Bowman; Sebastian Deindl;

Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling

Abstract

AbstractATP-dependent chromatin remodelling enzymes (remodellers) regulate DNA accessibility in eukaryotic genomes. Many remodellers reposition (slide) nucleosomes, however, how DNA is propagated around the histone octamer during this process is unclear. Here we examine the real-time coordination of remodeller-induced DNA movements on both sides of the nucleosome using three-colour single-molecule FRET. During sliding by Chd1 and SNF2h remodellers, DNA is shifted discontinuously, with movement of entry-side DNA preceding that of exit-side DNA. The temporal delay between these movements implies a single rate-limiting step dependent on ATP binding and transient absorption or buffering of at least one base pair. High-resolution cross-linking experiments show that sliding can be achieved by buffering as few as 3 bp between entry and exit sides of the nucleosome. We propose that DNA buffering ensures nucleosome stability during ATP-dependent remodelling, and provides a means for communication between remodellers acting on opposite sides of the nucleosome.

Country
Sweden
Keywords

Saccharomyces cerevisiae Proteins, Chromosomal Proteins, Non-Histone, Science, Xenopus, Saccharomyces cerevisiae, Buffers, Biochemistry, Article, Histones, Adenosine Triphosphate, Fluorescence Resonance Energy Transfer, Animals, Humans, Biokemi, Molecular Biology, Adenosine Triphosphatases, Molekylärbiologi, Q, Biochemistry and Molecular Biology, DNA Helicases, DNA, Chromatin, Nucleosomes, DNA-Binding Proteins, Biokemi och molekylärbiologi, Protein Binding

  • BIP!
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    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    87
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
87
Top 1%
Top 10%
Top 1%
Green
gold