Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling
Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling
AbstractATP-dependent chromatin remodelling enzymes (remodellers) regulate DNA accessibility in eukaryotic genomes. Many remodellers reposition (slide) nucleosomes, however, how DNA is propagated around the histone octamer during this process is unclear. Here we examine the real-time coordination of remodeller-induced DNA movements on both sides of the nucleosome using three-colour single-molecule FRET. During sliding by Chd1 and SNF2h remodellers, DNA is shifted discontinuously, with movement of entry-side DNA preceding that of exit-side DNA. The temporal delay between these movements implies a single rate-limiting step dependent on ATP binding and transient absorption or buffering of at least one base pair. High-resolution cross-linking experiments show that sliding can be achieved by buffering as few as 3 bp between entry and exit sides of the nucleosome. We propose that DNA buffering ensures nucleosome stability during ATP-dependent remodelling, and provides a means for communication between remodellers acting on opposite sides of the nucleosome.
Saccharomyces cerevisiae Proteins, Chromosomal Proteins, Non-Histone, Science, Xenopus, Saccharomyces cerevisiae, Buffers, Biochemistry, Article, Histones, Adenosine Triphosphate, Fluorescence Resonance Energy Transfer, Animals, Humans, Biokemi, Molecular Biology, Adenosine Triphosphatases, Molekylärbiologi, Q, Biochemistry and Molecular Biology, DNA Helicases, DNA, Chromatin, Nucleosomes, DNA-Binding Proteins, Biokemi och molekylärbiologi, Protein Binding
Saccharomyces cerevisiae Proteins, Chromosomal Proteins, Non-Histone, Science, Xenopus, Saccharomyces cerevisiae, Buffers, Biochemistry, Article, Histones, Adenosine Triphosphate, Fluorescence Resonance Energy Transfer, Animals, Humans, Biokemi, Molecular Biology, Adenosine Triphosphatases, Molekylärbiologi, Q, Biochemistry and Molecular Biology, DNA Helicases, DNA, Chromatin, Nucleosomes, DNA-Binding Proteins, Biokemi och molekylärbiologi, Protein Binding
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