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The computational analyses, molecular dynamics of fatty-acid transport mechanism to the CD36 receptor

التحليلات الحسابية، الديناميكيات الجزيئية لآلية نقل الأحماض الدهنية إلى مستقبلات CD36
Authors: Jihane Akachar; Catherine Etchebest; Rachid El Jaoudi; Azeddine Ibrahimi;

The computational analyses, molecular dynamics of fatty-acid transport mechanism to the CD36 receptor

Abstract

AbstractThe transmembrane glycoprotein CD36, which is responsible of the metabolic disorders, and the elevated intake of fat induces lipid buildup, is a multifunctional scavenger receptor signaling those functions in high-affinity tissue uptake of long-chain fatty acids. In this study, we used series of molecular dynamics simulations of the wild type and mutants types K164A CD36 protein interacting with one palmitic acid (PLM) besides simulations of the wild type interacting with the three PLM to find out the mechanism of the functioning of the complex CD36/Fatty acids and the unraveling of the role of the mutation. Additionally we determined whether Lys164, mostly exposed to protein surface, played important roles in fatty acid uptake. These simulations revealed, the conformational changes induced by Lys164 residue and the altered interactions induced by the mutagenesis of surface lysine that was badly influencing the folding, utility, solubility, and stability form of the variant. Furthermore, Lys164 residue provided the structural basis of forming an opening at the region of principal portal for the dissociation of palmitic acid. The results of our simulations revealed hole two fatty acids found in CD36 cavity structure and it was the most preferred to CD36 structure stabilization.

Keywords

CD36 Antigens, Computational chemistry, Protein Conformation, Science, Peroxisome Proliferator-Activated Receptors, Materials Science, Agonist, Palmitic Acid, Biophysics, Molecular Dynamics Simulation, Molecular dynamics, Biochemistry, Gene, Article, Transmembrane domain, lipid, Palmitic acid, Biochemistry, Genetics and Molecular Biology, Materials Chemistry, Humans, Point Mutation, Molecular Biology, Biology, Protein Structure Prediction and Analysis, Macromolecular Crystallography Techniques, Q, Fatty Acids, Free fatty acid receptor 1, R, Mutant, Life Sciences, Biological Transport, Fatty acid, fatty acid-binding proteins, Chemistry, Metabolism, Physical Sciences, Protein structure, Medicine, CD36, Receptor

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
5
Top 10%
Average
Average
Green
gold