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ZENODO
Software . 2022
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2022
License: CC BY
Data sources: Datacite
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motif-kit: tools for calculating position-specific scoring matrices for motif analysis in bioinformatics

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 03 Mar 2022Publisher:Zenodo
Authors: Invergo, Brandon M;

doi: 10.5281/zenodo.6325135 , 10.5281/zenodo.6325136

motif-kit: tools for calculating position-specific scoring matrices for motif analysis in bioinformatics

Abstract

motif-kit is a collection of command-line tools for generating position-specific scoring matrices (also known as position weight matrices) for probabilistic analysis of biological sequence motifs. It also implements a Naive Bayes-based model for substrate assignment which is related to position-specific scoring matrices. The collection includes tools for compiling matrices, cross-validating them, scoring sequences, and simulating sequences.

Related Organizations
Keywords

sequence analysis, motif, protein kinase, bioinformatics, protein phosphorylation

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