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ZENODO
Dataset . 2023
Data sources: Datacite
ZENODO
Dataset . 2024
Data sources: Datacite
ZENODO
Dataset . 2024
Data sources: Datacite
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SCimilarity Tutorial Data

Authors: Graham Heimberg; Tony Kuo; Nathaniel Diamant; Omar Salem; Héctor Corrada Bravo; Jason Vander Heiden;
Abstract

SCimilarity is a unifying representation of single-cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training. This enables a novel cell search capability, which sifts through millions of profiles to find cells similar to a query cell state and allows researchers to quickly and systematically leverage massive public scRNA-seq atlases to learn about a cell state of interest. This repository contains public datasets for SCimilarity tutorials, specifically: A subsample of single-cell data from Adams, et al. Science Advances, 2020 (GSE136831) as an AnnData object in h5ad format. Terms of GSE136831: Used with permission. Research developed by TLC4PF and the Yale School of Medicine led by Dr. Naftali Kaminski. © 2023 Pulmonary Fibrosis Cell Atlas website and associated content. All rights reserved. Please see the project website for more information: www.IPFCellAtlas.com In addition, please cite (https://www.science.org/doi/10.1126/sciadv.aba1983 and for a description of the website creation methodology please cite (https://doi.org/10.1152/ajplung.00451.2020).

Related Organizations
Keywords

SCimilarity, single-cell RNA-seq, deep learning, cell type annotation, cell search, cell type classification, cell query

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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