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The Journal of Immunology
Article . 2002 . Peer-reviewed
License: OUP Standard Publication Reuse
Data sources: Crossref
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Epitope Recognition by Diverse Antibodies Suggests Conformational Convergence in an Antibody Response

Authors: Deepak T, Nair; Kavita, Singh; Zaved, Siddiqui; Bishnu P, Nayak; Kanury V S, Rao; Dinakar M, Salunke;

Epitope Recognition by Diverse Antibodies Suggests Conformational Convergence in an Antibody Response

Abstract

Abstract Crystal structures of distinct mAbs that recognize a common epitope of a peptide Ag have been determined and analyzed in the unbound and bound forms. These Abs display dissimilar binding site structures in the absence of the Ag. The dissimilarity is primarily expressed in the conformations of complementarity-determining region H3, which is responsible for defining the epitope specificity. Interestingly, however, the three Abs exhibit similar complementarity-determining region conformations in the Ag binding site while recognizing the common epitope, indicating that different pathways of binding are used for Ag recognition. The epitope also exhibits conformational similarity when bound to each of these Abs, although the peptide Ag was otherwise flexible. The observed conformational convergence in the epitope and the Ag binding site was facilitated by the plasticity in the nature of interactions.

Keywords

Models, Molecular, Binding Sites, Immunodominant Epitopes, Protein Conformation, Molecular Sequence Data, Antibodies, Monoclonal, Hydrogen Bonding, Complementarity Determining Regions, Mice, Animals, Epitopes, B-Lymphocyte, Amino Acid Sequence, Antigens, Crystallization, Peptides, Oligopeptides, Sequence Alignment, Protein Binding

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    Top 10%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
81
Top 10%
Top 10%
Top 10%
bronze