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Viruses
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Viruses
Article . 2020
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Viruses
Article . 2020
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The Sialoside-Binding Pocket of SARS-CoV-2 Spike Glycoprotein Structurally Resembles MERS-CoV

Authors: Mayanka Awasthi; Sahil Gulati; Debi P. Sarkar; Swasti Tiwari; Suneel Kateriya; Peeyush Ranjan; Santosh Kumar Verma;

The Sialoside-Binding Pocket of SARS-CoV-2 Spike Glycoprotein Structurally Resembles MERS-CoV

Abstract

COVID-19 novel coronavirus (CoV) disease caused by severe acquired respiratory syndrome (SARS)-CoV-2 manifests severe lethal respiratory illness in humans and has recently developed into a worldwide pandemic. The lack of effective treatment strategy and vaccines against the SARS-CoV-2 poses a threat to human health. An extremely high infection rate and multi-organ secondary infection within a short period of time makes this virus more deadly and challenging for therapeutic interventions. Despite high sequence similarity and utilization of common host-cell receptor, human angiotensin-converting enzyme-2 (ACE2) for virus entry, SARS-CoV-2 is much more infectious than SARS-CoV. Structure-based sequence comparison of the N-terminal domain (NTD) of the spike protein of Middle East respiratory syndrome (MERS)-CoV, SARS-CoV, and SARS-CoV-2 illustrate three divergent loop regions in SARS-CoV-2, which is reminiscent of MERS-CoV sialoside binding pockets. Comparative binding analysis with host sialosides revealed conformational flexibility of SARS-CoV-2 divergent loop regions to accommodate diverse glycan-rich sialosides. These key differences with SARS-CoV and similarity with MERS-CoV suggest an evolutionary adaptation of SARS-CoV-2 spike glycoprotein reciprocal interaction with host surface sialosides to infect host cells with wide tissue tropism.

Keywords

Models, Molecular, 570, N-terminal domain, 610, Molecular Dynamics Simulation, Microbiology, Betacoronavirus, MERS-CoV, Protein Domains, Sialyl Lewis X Antigen, spike glycoprotein, Binding Sites, SARS-CoV-2, Communication, Amino Sugars, Virus Internalization, QR1-502, N-Acetylneuraminic Acid, Molecular Docking Simulation, Viral Tropism, Severe acute respiratory syndrome-related coronavirus, Spike Glycoprotein, Coronavirus, Middle East Respiratory Syndrome Coronavirus, Sialic Acids, Receptors, Virus, Protein Binding, Receptors, Coronavirus

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
59
Top 1%
Top 10%
Top 1%
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