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Design, Synthesis and Structure—Activity Relationships of Phenylalanine-Containing Peptidomimetics as Novel HIV-1 Capsid Binders Based on Ugi Four-Component Reaction

Authors: Ji, Xiangkai; Li, Jing; Sharma, Prem Prakash; Jiang, Xiangyi; Rathi, Brijesh; Gao, Zhen; Hu, Lide; +8 Authors

Design, Synthesis and Structure—Activity Relationships of Phenylalanine-Containing Peptidomimetics as Novel HIV-1 Capsid Binders Based on Ugi Four-Component Reaction

Abstract

As a key structural protein, HIV capsid (CA) protein plays multiple roles in the HIV life cycle, and is considered a promising target for anti-HIV treatment. Based on the structural information of CA modulator PF-74 bound to HIV-1 CA hexamer, 18 novel phenylalanine derivatives were synthesized via the Ugi four-component reaction. In vitro anti-HIV activity assays showed that most compounds exhibited low-micromolar-inhibitory potency against HIV. Among them, compound I-19 exhibited the best anti-HIV-1 activity (EC50 = 2.53 ± 0.84 μM, CC50 = 107.61 ± 27.43 μM). In addition, I-14 displayed excellent HIV-2 inhibitory activity (EC50 = 2.30 ± 0.11 μM, CC50 > 189.32 μM) with relatively low cytotoxicity, being more potent than that of the approved drug nevirapine (EC50 > 15.02 μM, CC50 > 15.2 μM). Additionally, surface plasmon resonance (SPR) binding assays demonstrated direct binding to the HIV CA protein. Moreover, molecular docking and molecular dynamics simulations provided additional information on the binding mode of I-19 to HIV-1 CA. In summary, we further explored the structure—activity relationships (SARs) and selectivity of anti-HIV-1/HIV-2 of PF-74 derivatives, which is conducive to discovering efficient anti-HIV drugs.

Country
Belgium
Keywords

Biochemistry & Molecular Biology, TERMINAL DOMAIN, drug design, Anti-HIV Agents, Chemistry, Multidisciplinary, Phenylalanine, PROTEIN, Organic chemistry, 0305 Organic Chemistry, Article, MOLECULES, Structure-Activity Relationship, QD241-441, Capsid, 0307 Theoretical and Computational Chemistry, Nevirapine, 3404 Medicinal and biomolecular chemistry, Science & Technology, 0304 Medicinal and Biomolecular Chemistry, DERIVATIVES, Organic Chemistry, Ugi four-component reaction, INHIBITOR, capsid modulators, Molecular Docking Simulation, Chemistry, DISCOVERY, peptidomimetics, Drug Design, Physical Sciences, HIV-1, Capsid Proteins, Peptidomimetics, 3405 Organic chemistry, HIV-1; capsid modulators; peptidomimetics; Ugi four-component reaction; drug design, Life Sciences & Biomedicine

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
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    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Top 10%
Average
Average
Green
gold