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Reagent and Data Resources for Investigation of RNA Binding Protein Functions inDrosophila melanogasterCultured Cells

Reagent and Data Resources for Investigation of RNA Binding Protein Functions inDrosophila melanogasterCultured Cells
AbstractRNA binding proteins (RBPs) are involved in many cellular functions. To facilitate functional characterization of RBPs, we generated an RNA interference (RNAi) library for Drosophila cell-based screens comprising reagents targeting known or putative RBPs. To test the quality of the library and provide a baseline analysis of the effects of the RNAi reagents on viability, we screened the library using a total ATP assay and high-throughput imaging in Drosophila S2R+ cultured cells. The results are consistent with production of a high-quality library that will be useful for functional genomics studies using other assays. Altogether, we provide resources in the form of an initial curated list of Drosophila RBPs; an RNAi screening library we expect to be used with additional assays that address more specific biological questions; and total ATP and image data useful for comparison of those additional assay results with fundamental information such as effects of a given reagent in the library on cell viability. Importantly, we make the baseline data, including more than 200,000 images, easily accessible online.
- Howard Hughes Medical Institute United States
- University of Michigan–Flint United States
- Life Science Institute Japan
- Harvard University United States
570, data sharing, Computational Biology, RNA-Binding Proteins, Genomics, Investigations, 540, RNA binding protein, High-Throughput Screening Assays, Adenosine Triphosphate, Drosophila melanogaster, RNAi, Animals, Drosophila Proteins, RNA Interference, RNA, Small Interfering, high-throughput screen, Cells, Cultured, Gene Library
570, data sharing, Computational Biology, RNA-Binding Proteins, Genomics, Investigations, 540, RNA binding protein, High-Throughput Screening Assays, Adenosine Triphosphate, Drosophila melanogaster, RNAi, Animals, Drosophila Proteins, RNA Interference, RNA, Small Interfering, high-throughput screen, Cells, Cultured, Gene Library
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