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RNA
Article
Data sources: UnpayWall
RNA
Article . 2006 . Peer-reviewed
Data sources: Crossref
RNA
Article . 2007
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Role of metal ions in the tetraloop–receptor complex as analyzed by NMR

Authors: Jared H, Davis; Trenton R, Foster; Marco, Tonelli; Samuel E, Butcher;

Role of metal ions in the tetraloop–receptor complex as analyzed by NMR

Abstract

Metal ions are critical for the proper folding of RNA, and the GAAA tetraloop–receptor is necessary for the optimal folding and function of many RNAs. We have used NMR to investigate the role of metal ions in the structure of the tetraloop–receptor in solution. The NMR data indicate native tertiary structure is formed under a wide range of ionic conditions. The lack of conformational adaptation in response to very different ionic conditions argues against a structural role for divalent ions. Nuclear Overhauser effects to cobalt hexammine and paramagnetic relaxation enhancement induced by manganese ions were used to determine the NMR structures of the tetraloop receptor in association with metal ions, providing the first atomic-level view of these interactions in the solution state. Five manganese and two cobalt hexammine ions could be localized to the RNA surface. The locations of the associated metal ions are similar, but not identical to, those of previously determined crystal structures. The sites of association are in general agreement with nonlinear Poisson–Boltzmann calculations of the electrostatic surface, emphasizing the general importance of diffusely associated ions in RNA tertiary structure.

Keywords

Ions, Manganese, Magnetic Resonance Spectroscopy, Base Sequence, Cations, Divalent, Molecular Sequence Data, Cobalt, Solutions, Metals, Nucleic Acid Conformation, RNA

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    59
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    Top 10%
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Powered by OpenAIRE graph
citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
59
Top 10%
Top 10%
Top 10%
bronze