Structural Genomics of the Severe Acute Respiratory Syndrome Coronavirus: Nuclear Magnetic Resonance Structure of the Protein nsP7
Structural Genomics of the Severe Acute Respiratory Syndrome Coronavirus: Nuclear Magnetic Resonance Structure of the Protein nsP7
ABSTRACTHere, we report the three-dimensional structure of severe acute respiratory syndrome coronavirus (SARS-CoV) nsP7, a component of the SARS-CoV replicase polyprotein. The coronavirus replicase carries out regulatory tasks involved in the maintenance, transcription, and replication of the coronavirus genome. nsP7 was found to assume a compact architecture in solution, which is comprised primarily of helical secondary structures. Three helices (α2 to α4) form a flat up-down-up antiparallel α-helix sheet. The N-terminal segment of residues 1 to 22, containing two turns of α-helix and one turn of 310-helix, is packed across the surface of α2 and α3 in the helix sheet, with the α-helical region oriented at a 60° angle relative to α2 and α3. The surface charge distribution is pronouncedly asymmetrical, with the flat surface of the helical sheet showing a large negatively charged region adjacent to a large hydrophobic patch and the opposite side containing a positively charged groove that extends along the helix α1. Each of these three areas is thus implicated as a potential site for protein-protein interactions.
- Joint Center for Structural Genomics United States
- Scripps Research Institute United States
Models, Molecular, Molecular Sequence Data, Immunology, RNA-Dependent RNA Polymerase, Microbiology, Protein Structure, Secondary, Protein Structure, Tertiary, Viral Proteins, Severe acute respiratory syndrome-related coronavirus, Insect Science, Virology, RNA Viruses, Amino Acid Sequence, Nuclear Magnetic Resonance, Biomolecular, Sequence Alignment, Polyproteins
Models, Molecular, Molecular Sequence Data, Immunology, RNA-Dependent RNA Polymerase, Microbiology, Protein Structure, Secondary, Protein Structure, Tertiary, Viral Proteins, Severe acute respiratory syndrome-related coronavirus, Insect Science, Virology, RNA Viruses, Amino Acid Sequence, Nuclear Magnetic Resonance, Biomolecular, Sequence Alignment, Polyproteins
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