RNAloops: a database of RNA multiloops
RNAloops: a database of RNA multiloops
AbstractMotivationKnowledge of the 3D structure of RNA supports discovering its functions and is crucial for designing drugs and modern therapeutic solutions. Thus, much attention is devoted to experimental determination and computational prediction targeting the global fold of RNA and its local substructures. The latter include multi-branched loops—functionally significant elements that highly affect the spatial shape of the entire molecule. Unfortunately, their computational modeling constitutes a weak point of structural bioinformatics. A remedy for this is in collecting these motifs and analyzing their features.ResultsRNAloops is a self-updating database that stores multi-branched loops identified in the PDB-deposited RNA structures. A description of each loop includes angular data—planar and Euler angles computed between pairs of adjacent helices to allow studying their mutual arrangement in space. The system enables search and analysis of multiloops, presents their structure details numerically and visually, and computes data statistics.Availability and implementationRNAloops is freely accessible at https://rnaloops.cs.put.poznan.pl.Supplementary informationSupplementary data are available at Bioinformatics online.
Databases, Factual, Sequence Analysis, RNA, RNA, Nucleic Acid Conformation, Original Papers, Software
Databases, Factual, Sequence Analysis, RNA, RNA, Nucleic Acid Conformation, Original Papers, Software
15 Research products, page 1 of 2
- 2017IsRelatedTo
- 2019IsRelatedTo
- 2017IsRelatedTo
- 2017IsRelatedTo
- 2017IsRelatedTo
- 2019IsRelatedTo
- 2017IsRelatedTo
- 2003IsRelatedTo
- 2017IsRelatedTo
chevron_left - 1
- 2
chevron_right
citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).12 popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.Top 10% influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).Average impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.Top 10%
