In SilicoGenomic Analysis of the Human and Murine Guanylate-Binding Protein (GBP) Gene Clusters
pmid: 16689661
In SilicoGenomic Analysis of the Human and Murine Guanylate-Binding Protein (GBP) Gene Clusters
The guanylate-binding proteins (GBPs) were among the first interferon (IFN)-stimulated genes (ISGs) discovered, but until recently, little was known about their functions and even less about the composition of the gene family. Analysis of the promoter of human GBP-1 contributed significantly toward the understanding of Jak-Stat signaling and the delineation of the IFN-gamma activation site (GAS) and IFN-stimulated response element (ISRE) promoter elements. In this study, we have examined the genomic arrangement and composition of the GBPs in both mouse and humans. There are seven GBP paralogs in humans and at least one pseudogene, all of which are located in a cluster of genes on chromosome 1. Five of the six MuGBPs and a GBP pseudogene are clustered in a syntenic region on chromosome 3. The sixth MuGBP, MuGBP-4, and three GBP pseudogenes are located on chromosome 5. As might be expected, the GBPs share similar genomic organizations of introns and exons. Five of the MuGBPs had previously been shown to be coordinately induced by IFNs, and as expected, all of the MuGBPs have GAS and ISRE elements in their promoters. Interestingly, not all of the HuGBPs have GAS and ISRE elements, suggesting that not all GBPs are IFN responsive in humans.
- University System of Ohio United States
- University of Toledo United States
Binding Sites, Base Sequence, Molecular Sequence Data, Computational Biology, Sequence Homology, Exons, Genomics, Evolution, Molecular, Mice, GTP-Binding Proteins, Multigene Family, Consensus Sequence, Animals, Humans, Amino Acid Sequence, Promoter Regions, Genetic, Sequence Alignment, Phylogeny, Transcription Factors
Binding Sites, Base Sequence, Molecular Sequence Data, Computational Biology, Sequence Homology, Exons, Genomics, Evolution, Molecular, Mice, GTP-Binding Proteins, Multigene Family, Consensus Sequence, Animals, Humans, Amino Acid Sequence, Promoter Regions, Genetic, Sequence Alignment, Phylogeny, Transcription Factors
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