A retroviral RNA kissing complex containing only two G⋅C base pairs
A retroviral RNA kissing complex containing only two G⋅C base pairs
The dimerization of viral RNA through noncovalent interactions at their 5′ ends is a key step in the life cycle of retroviruses. In Moloney murine leukemia virus, three stem-loops are important in this process. One is a self-complementary tetraloop (H1), but the other two stem-loops (H2, H3) contain highly conserved GACG tetraloops that are not self-complementary sequences. Using two-dimensional NMR, we determined the structure of the H3 stem-loop. Surprisingly, it forms a stable, homodimeric kissing complex through only two intermolecular G⋅C base pairs. Cross-strand interactions of the adenines adjacent to the intermolecular G⋅C base pairs, plus unusual strong electrostatic interactions around the base pairs, contribute to the unexpected stability. This structure shows how even stem-loops without self-complementary sequences can facilitate the intermolecular recognition between two identical RNAs, and thus initiate dimerization and encapsidation of retroviral RNAs.
- Lawrence Berkeley National Laboratory United States
- University of the Sciences United States
Models, Molecular, Guanine, Base Sequence, Ultraviolet Rays, Adenine, RNA Stability, Static Electricity, Temperature, Nucleic Acid Denaturation, Cytosine, RNA, Viral, Moloney murine leukemia virus, Base Pairing, Dimerization, Nuclear Magnetic Resonance, Biomolecular
Models, Molecular, Guanine, Base Sequence, Ultraviolet Rays, Adenine, RNA Stability, Static Electricity, Temperature, Nucleic Acid Denaturation, Cytosine, RNA, Viral, Moloney murine leukemia virus, Base Pairing, Dimerization, Nuclear Magnetic Resonance, Biomolecular
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