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Nature Methods
Article
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Nature Methods
Article . 2007 . Peer-reviewed
License: Springer TDM
Data sources: Crossref
Nature Methods
Article . 2008
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Comprehensive analysis of diverse ribonucleoprotein complexes

Authors: Marlene Oeffinger; Michael P. Rout; Karen E Wei; Richard S. Rogers; John D. Aitchison; Brian T. Chait; Jeffrey A. DeGrasse;

Comprehensive analysis of diverse ribonucleoprotein complexes

Abstract

The study of the dynamic interactome of cellular ribonucleoprotein (RNP) particles has been hampered by severe methodological limitations. In particular, the affinity purification of intact RNP complexes from cell lysates suffers from RNA degradation, loss of interacting macromolecules and poor overall yields. Here we describe a rapid affinity-purification method for efficient isolation of the subcomplexes that dynamically organize different RNP biogenesis pathways in Saccharomyces cerevisiae. Our method overcomes many of the previous limitations to produce large RNP interactomes with almost no contamination.

Related Organizations
Keywords

Ribosomal Proteins, Nucleocytoplasmic Transport Proteins, Saccharomyces cerevisiae Proteins, Green Fluorescent Proteins, Nuclear Proteins, Porins, RNA-Binding Proteins, RNA, Fungal, Saccharomyces cerevisiae, Mass Spectrometry, DNA-Binding Proteins, Ribonucleoproteins, RNA Cap-Binding Proteins, RNA, Ribosomal, Electrophoresis, Polyacrylamide Gel, RNA, Messenger, Staphylococcal Protein A, Immunosorbent Techniques, Oligonucleotide Array Sequence Analysis

  • BIP!
    Impact byBIP!
    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    245
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
Powered by OpenAIRE graph
citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
245
Top 1%
Top 10%
Top 1%
bronze