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Dynamics of an integral membrane peptide: a deuterium NMR relaxation study of gramicidin

Dynamics of an integral membrane peptide: a deuterium NMR relaxation study of gramicidin
Solid state deuterium (2H) NMR inversion-recovery and Jeener-Broekaert relaxation experiments were performed on oriented multilamellar dispersions consisting of 1,2-dilauroyl-sn-glycero-3-phosphatidylcholine and 2H exchange-labeled gramicidin D, at a lipid to protein molar ratio (L/P) of 15:1, in order to study the dynamics of the channel conformation of the peptide in a liquid crystalline phase. Our dynamic model for the whole body motions of the peptide includes diffusion of the peptide around its helix axis and a wobbling diffusion around a second axis perpendicular to the local bilayer normal in a simple Maier-Saupe mean field potential. This anisotropic diffusion is characterized by the correlation times, tau R parallel and tau R perpendicular. Aligning the bilayer normal perpendicular to the magnetic field and graphing the relaxation rate, 1/T1Z, as a function of (1-S2N-2H), where S2N-2H represents the orientational order parameter, wer were able to estimate the correlation time, tau R parallel, for rotational diffusion. Although in the quadrupolar splitting, which varies as (3 cos2 theta D-1), has in general two possible solutions to theta D in the range 0 1/2 (= 16 +/- 2 degrees at 34 degrees C), formed by the peptide helix axis and the average bilayer normal.
- University of Guelph Canada
Models, Molecular, Magnetic Resonance Spectroscopy, Molecular Structure, Lipid Bilayers, Biophysics, Gramicidin, Membrane Proteins, In Vitro Techniques, Deuterium, Biophysical Phenomena, Diffusion, Models, Chemical, Phosphatidylcholines, Thermodynamics, Computer Simulation
Models, Molecular, Magnetic Resonance Spectroscopy, Molecular Structure, Lipid Bilayers, Biophysics, Gramicidin, Membrane Proteins, In Vitro Techniques, Deuterium, Biophysical Phenomena, Diffusion, Models, Chemical, Phosphatidylcholines, Thermodynamics, Computer Simulation
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