Bioinformatic characterization of the SynCAM family of immunoglobulin-like domain-containing adhesion molecules
pmid: 16311015
Bioinformatic characterization of the SynCAM family of immunoglobulin-like domain-containing adhesion molecules
SynCAM 1 (synaptic cell adhesion molecule 1, alternatively named Tslc1 and nectin-like protein 3) belongs to the immunoglobulin superfamily and is an adhesion molecule that operates in a variety of important contexts. Exemplary are its roles in adhesion at synapses in the central nervous system and as tumor suppressor. Here, I describe a family of genes homologous to SynCAM 1 comprising four genes found solely in vertebrates. All SynCAM genes encode proteins with three immunoglobulin-like domains of the V-set, C1-set, and I-set subclasses. Comparison of genomic with cDNA sequences provides their exon-intron structure. Alternative splicing generates isoforms of SynCAM proteins, and diverse SynCAM 1 and 2 isoforms are created in an extracellular region rich in predicted O-glycosylation sites. Protein interaction motifs in the cytosolic sequence are highly conserved among all four SynCAM proteins, indicating their critical functional role. These findings aim to facilitate the understanding of SynCAM genes and provide the framework to examine the physiological functions of this family of vertebrate-specific adhesion molecules.
- Yale University United States
- University of New Haven United States
Central Nervous System, SynCAM, Cell Adhesion Molecules, Neuronal, Nectin-like molecule, Amino Acid Motifs, Genetics, Animals, Humans, Synapse formation, Genes, Tumor Suppressor, Surface recognition, Cell adhesion molecules, Sequence Homology, Amino Acid, Genome, Human, Tslc, SgIGSF, IGSF4, Protein Structure, Tertiary, Immunoglobulin superfamily, Alternative Splicing, Central nervous system, Synapses, Vertebrates, Synaptic cell adhesion molecule, Genomic structure, Exon–intron junctions, Protein Modification, Translational
Central Nervous System, SynCAM, Cell Adhesion Molecules, Neuronal, Nectin-like molecule, Amino Acid Motifs, Genetics, Animals, Humans, Synapse formation, Genes, Tumor Suppressor, Surface recognition, Cell adhesion molecules, Sequence Homology, Amino Acid, Genome, Human, Tslc, SgIGSF, IGSF4, Protein Structure, Tertiary, Immunoglobulin superfamily, Alternative Splicing, Central nervous system, Synapses, Vertebrates, Synaptic cell adhesion molecule, Genomic structure, Exon–intron junctions, Protein Modification, Translational
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