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Structure
Article
License: Elsevier Non-Commercial
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Structure
Article . 2008
License: Elsevier Non-Commercial
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Structure
Article . 2008 . Peer-reviewed
License: Elsevier Non-Commercial
Data sources: Crossref
Structure
Article . 2008
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Crystal Structure of the Outer Membrane Protein OpdK from Pseudomonas aeruginosa

Authors: Biswas, Shyamasri; Mohammad, Mohammad M.; Movileanu, Liviu; van den Berg, Bert;

Crystal Structure of the Outer Membrane Protein OpdK from Pseudomonas aeruginosa

Abstract

In Gram-negative bacteria that do not have porins, most water-soluble and small molecules are taken up by substrate-specific channels belonging to the OprD family. We report here the X-ray crystal structure of OpdK, an OprD family member implicated in the uptake of vanillate and related small aromatic acids. The OpdK structure reveals a monomeric, 18-stranded beta barrel with a kidney-shaped central pore. The OpdK pore constriction is relatively wide for a substrate-specific channel (approximately 8 A diameter), and it is lined by a positively charged patch of arginine residues on one side and an electronegative pocket on the opposite side-features likely to be important for substrate selection. Single-channel electrical recordings of OpdK show binding of vanillate to the channel, and they suggest that OpdK forms labile trimers in the outer membrane. Comparison of the OpdK structure with that of Pseudomonas aeruginosa OprD provides the first qualitative insights into the different substrate specificities of these closely related channels.

Related Organizations
Keywords

Models, Molecular, Vanillic Acid, MICROBIO, PROTEINS, Electric Conductivity, Membrane Transport Proteins, Porins, Biological Transport, Crystallography, X-Ray, Structural Biology, Pseudomonas aeruginosa, Molecular Biology, Bacterial Outer Membrane Proteins

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
45
Top 10%
Top 10%
Top 10%
hybrid