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Journal of Molecular Biology
Article . 2017 . Peer-reviewed
License: Elsevier TDM
Data sources: Crossref
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A Residue Specific Insight into the Arkadia E3 Ubiquitin Ligase Activity and Conformational Plasticity

Authors: Birkou, Maria; Chasapis, Christos T.; Marousis, Konstantinos D.; Loutsidou, Ariadni K.; Bentrop, Detlef; Lelli, Moreno; Herrmann, Torsten; +3 Authors

A Residue Specific Insight into the Arkadia E3 Ubiquitin Ligase Activity and Conformational Plasticity

Abstract

Arkadia (Rnf111) is an E3 ubiquitin ligase that plays a central role in the amplification of transforming growth factor beta (TGF-β) signaling responses by targeting for degradation the negative regulators of the pathway, Smad6 and Smad7, and the nuclear co-repressors Ski and Skil (SnoN). Arkadia's function in vivo depends on the really interesting new gene (RING)-H2 interaction with the E2 enzyme UbcH5b in order to ligate ubiquitin chains on its substrates. A conserved tryptophan (W972) in the C-terminal α-helix is widely accepted as essential for E2 recruitment and interaction and thus also for E3 enzymatic activity. The present NMR-driven study provides an atomic-level investigation of the structural and dynamical properties of two W972 Arkadia RING mutants, attempting to illuminate for the first time the differences between a functional and a nonfunctional mutant W972A and W972R, respectively. A TGF-β-responsive promoter driving luciferase was used to assay for Arkadia function in vivo. These experiments showed that the Arkadia W972A mutant has the same activity as wild-type (WT) Arkadia in enhancing TGF-β signaling responses, while W972R does not. Only minor structural differences exist between the W972A RING domain and WT-RING. In contrast, the W972R mutant hardly interacts with E2. The loss of function correlates with structural changes in the C-terminal α-helix and an increase in the distance between the Zn(II) ions. Our data show that the position occupied by W972 within WT Arkadia is critical for the function of RING and that it depends on the nature of the residue at this position.

Keywords

TGF-β, 570, Biochemistry & Molecular Biology, [CHIM.ANAL] Chemical Sciences/Analytical chemistry, Magnetic Resonance Spectroscopy, Protein Conformation, Ubiquitin-Protein Ligases, NMR STRUCTURE DETERMINATION, ASSIGNMENT, 610, HISTONE DEACETYLASE COMPLEX, Arginine, RING DOMAIN, TORSION ANGLE DYNAMICS, Rnf111, Genes, Reporter, Transforming Growth Factor beta, BINDING, [SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology, TRANSCRIPTION, NOESY SPECTRA, Luciferases, Reporter, Science & Technology, Alanine, IDENTIFICATION, Tryptophan, APSY; NMR; RING domain; Rnf111; TGF-β; Alanine; Amino Acid Substitution; Arginine; Genes, Reporter; Luciferases; Magnetic Resonance Spectroscopy; Mutant Proteins; Nuclear Proteins; Protein Conformation; Signal Transduction; Transforming Growth Factor beta; Tryptophan; Ubiquitin-Protein Ligases; Structural Biology; Molecular Biology, 0601 Biochemistry And Cell Biology, Nuclear Proteins, APSY, NMR, PROTEIN LIGASE, Genes, Amino Acid Substitution, Mutant Proteins, RING domain, Life Sciences & Biomedicine, Signal Transduction

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
22
Top 10%
Average
Top 10%
Green