Dioxygenases Without Requirement for Cofactors: Identification of Amino Acid Residues Involved in Substrate Binding and Catalysis, and Testing for Rate-Limiting Steps in the Reaction of 1H-3-Hydroxy-4-oxoquinaldine 2,4-dioxygenase
pmid: 16187153
Dioxygenases Without Requirement for Cofactors: Identification of Amino Acid Residues Involved in Substrate Binding and Catalysis, and Testing for Rate-Limiting Steps in the Reaction of 1H-3-Hydroxy-4-oxoquinaldine 2,4-dioxygenase
1H-3-Hydroxy-4-oxoquinaldine 2,4-dioxygenase (Hod), catalyzing cleavage of its heteroaromatic substrate to form carbon monoxide and N-acetylanthranilate, belongs to the alpha/beta hydrolase fold family of enzymes. Analysis of protein variants suggested that Hod has adapted active-site residues of the alpha/beta hydrolase fold for the dioxygenolytic reaction. H251 was recently shown to act as a general base to abstract a proton from the organic substrate. Residue S101, which corresponds to the nucleophile of the catalytic triad of alpha/beta-hydrolases, presumably participates in binding the heteroaromatic substrate. H102 and residues located in the topological region of the triad's acidic residue appear to influence O2 binding and reactivity. A tyrosine residue might be involved in the turnover of the ternary complex [HodH+-3,4-dioxyquinaldine dianion-O2]. Absence of viscosity effects and kinetic solvent isotope effects suggests that turnover of the ternary complex, rather than substrate binding, product release, or proton movements, involves the rate-determining step in the reaction catalyzed by Hod.
Binding Sites, Viscosity, Coenzymes, Hydrogen-Ion Concentration, Dioxygenases, Kinetics, Amino Acid Substitution, Catalytic Domain, Enzyme Stability, Mutagenesis, Site-Directed, Amino Acid Sequence, Amino Acids, Sequence Alignment
Binding Sites, Viscosity, Coenzymes, Hydrogen-Ion Concentration, Dioxygenases, Kinetics, Amino Acid Substitution, Catalytic Domain, Enzyme Stability, Mutagenesis, Site-Directed, Amino Acid Sequence, Amino Acids, Sequence Alignment
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